Ecology and Evolution In this introduction to ecology and evolutionary biology we will cover the topics of interspecific interactions (competition, predation, mutualism), demography and life-history patterns, succession and disturbance in natural communities, species diversity, stability and complexity, causes of evolutionary change, speciation, phylogenetic reconstruction, and population genetics.   The laboratory component will examine lecture topics in detail (such as measuring the evolutionary response of bacteria, adaptations of stream invertebrates to life in moving water, invasive species and their patterns of spread).  We will emphasize experimental design, data collection in the field and in the laboratory, data analysis, and writing skills. This course is not open to seniors and second semester juniors.

Experimental Design and Statistical Analysis Experimental design is one of the most important parts of doing science, but it is difficult to do well. How do you randomize mice? How many replicate petri plates should be inoculated? If I am measuring temperature in a forest, where do I put the thermometer? In this course students will design experiments across the sub-areas of biology. We will run student designed experiments, and then learn ways to analyze the data, and communicate the results. Students planning to do independent research are encouraged to take this course. (BIOL 0140 or BIOL 0145).

Plant Community Ecology This course will explore the structure and dynamics of plant communities, with a particular emphasis on temperate forest communities. We will investigate patterns in community diversity and structure, explore how plant populations and plant communities respond to environmental disturbances, and investigate the effects of anthropogenic influences (climate change, introduced species, habitat conversion) on plant communities. Labs will emphasize fieldwork at local research sites, and will provide exposure to techniques of experimental design in plant ecology and basic approaches to describing plant community structure and dynamics.

Lyme Disease Lyme disease is fascinating from medical, public health, and ecological perspectives. In this seminar we will explore the disease in an interdisciplinary fashion. We will look at the history of—and controversy around—its diagnosis, treatment, and control. Because Lyme has a tick vector and animal reservoirs, we will consider how the local environment affects it. Connections to other zoonotic diseases (SARS, West Nile, EEE) will be made. Readings will come from Bull's Eye: Unraveling the Medical Mystery of Lyme Disease by Eldow, Lyme Disease: The Ecology of a Complex System by Ostfeld, and primary sources.

Biostatistics II In this course we will explore how to use statistics to help answer questions in biology, building on the foundation set in Biology 211. There will be a focus on real-life data sets which require additional statistical complexity, for example accounting for non-normally distributed data or fixed versus random effects. We will think about the philosophical framework behind statistical methods, particularly considering the recent critique of an over-reliance on p-values. The class will have a “hands-on” approach in which we implement examples of covered material in the statistical programming language R.

Data Science Across Disciplines In this course, we will gain exposure to the entire data science pipeline—obtaining and cleaning, large and messy data sets, exploring these data and creating engaging visualizations, and communicating insights from the data in a meaningful manner. During morning sessions, we will learn the tools and techniques required to explore new and exciting data sets. During afternoon sessions, students will work in small groups with one of several faculty members on domain-specific research projects in Biology, Geography, History, Mathematics/Statistics and Sociology. This course will use the R programming language. No prior experience with R is necessary.  BIOL 1230: Students enrolled in Professor Casey’s (Biology) afternoon section will use the tools of data science to investigate the drivers of tick abundance and tick-borne disease risk. To do this students will draw from a nation-wide ecological database.  GEOG 1230: In this section, we will investigate human vulnerability to natural hazards in the United States using location-based text data about hurricane and flood disasters from social media. We will analyze data qualitatively, temporally, and spatially to gain insights into the human experience of previous disasters and disaster response. We will present findings using spatial data visualizations with the aim of informing future disaster preparedness and resilience.  HIST 1230: In U.S. history, racial differences and discrimination have powerfully shaped who benefited from land and farm ownership. How can historians use data to understand the history of race and farming? Students will wrangle county- and state-level data from the U.S. Census of Agriculture from 1840-1912 to create visualizations and apps that allow us to find patterns in the history of race and land, to discover new questions we might not know to ask, and to create tools to better reveal connections between race, land, and farming for a general audience.    STAT 1230: In this course students will dive into the world of data science by focusing on invasive species monitoring data. Early detection is crucial to controlling many invasive species; however, there is a knowledge gap regarding the sampling effort needed to detect the invader early. In this course, we will work with decades of invasive species monitoring data collected across the United States to better understand how environmental variables play a role in the sampling effort required to detect invasive species. Students will gain experience in the entire data science pipeline, but the primary focus will be on data scraping, data visualization, and communication of data-based results to scientists and policymakers.  SOCI 1230:  Do sports fans care about climate change? Can sports communication be used to engage audiences on environmental sustainability? In this section of the course, students will use the tools of data science to examine whether interest in sports is associated with climate change knowledge, attitudes and behaviors, as well as other political opinions. Participants will use survey data to produce visualizations and exploratory analyses about the relationship between sports fandom and attitudes about environmental sustainability.

Data Science Across Disciplines In this course, we will gain exposure to the entire data science pipeline—obtaining and cleaning large and messy data sets, exploring these data and creating engaging visualizations, and communicating insights from the data in a meaningful manner. During morning sessions, we will learn the tools and techniques required to explore new and exciting data sets. During afternoon sessions, students will work in small groups with one of several faculty members on domain-specific research projects in Anthropology, Biology, Classics, Political Science, and Statistics. This course will use the R programming language. No prior experience with programming is necessary. (Not open to students who have taken STAT 0118, STAT 0201, ANTH 1230, BIOL 1230, CLAS 1230, ECON 1230, ECSC 1230, ENVS 1230, FMMC 1230, GEOG 1230, HARC 1230, HIST 1230, JAPN 1230, LNGT 1230, MATH 1230, NSCI 1230, PSCI 1230, SOCI 1230, STAT 1230, or WRPR 1230.)  ANTH/LNGT 1230: In this section we will explore indigenous political voice in unexpected places. The data we will analyze will consist of bilingual Apache-English and Maidu-English stories, songs and speeches originally recorded by anthropological linguists in the early twentieth century as examples of traditional culture. Students will use R to search this corpora for how indigenous contributors were also making claims on the future in their address to the researcher and to wider anticipated audiences. This course includes a community engagement component.  BIOL/ECSC 1230: In this section we will work with data collected by elephant seals equipped with oceanographic instruments in the Southern Ocean. Depending on your interests, you can approach the project from different angles: students focusing on biology will explore where the seals travel and what drives their movements, while those interested in earth science will investigate the temperature and salinity profiles gathered during their dives. Working in teams, you’ll combine these perspectives to build a fuller picture of both seal ecology and the oceanographic processes that shape their environment. Along the way, you’ll practice manipulating and visualizing different types of data including maps of seal tracks, temperature and salinity profiles, and cross-sections of ocean properties. We will also bring in satellite  and autonomous float data to place seal activity and the data they collect in a broader context. By the end, you’ll have a sense of how these different data sources fit together and what unique insights we gain from using seals as oceanographers.  CLAS 1230: In this section students will gain hands-on experience with a variety of natural language processing and text mining techniques by exploring the writings of the ancient historian Plutarch, who lived during the first and second centuries AD.  We will focus on the biographies of "great men" in Plutarch’s Lives, which chronicles the history, morals, and virtues of major figures who played parallel roles in ancient Greek and Roman society. The public domain English translation from Project Gutenberg will serve as our main corpus; however, students with a background or interest in Ancient Greek can work with the text in the original language. Using the R programming language, students will transform unstructured text into quantitative data for statistical analysis and morphosyntactic parsing. We will also apply machine learning models to our data to reveal underlying patterns in large amounts of text. No prior experience with R is necessary.  PSCI 1230: Who votes in elections? Who attends protests? Why? In this section we will use the tools of data science to explore these and other questions about political participation in the Americas. We will examine engagement in different forms of participation and the demographic, economic, social, and other factors that shape participation. The class will introduce students to the basics of survey research and the study of political participation.  Students will complete a final group project showcasing the concepts and tools learned in class.   STAT 1230: In this section students will dive into the world of data science by focusing on invasive species monitoring data. Early detection is crucial to controlling many invasive species; however, there is a knowledge gap regarding the sampling effort needed to detect the invader early. In this course, we will work with decades of invasive species monitoring data collected across the United States to better understand how environmental variables play a role in the sampling effort required to detect invasive species. Students will gain experience in the entire data science pipeline, but the primary focus will be on data scraping, data visualization, and communication of data-based results to scientists and policymakers.

Data Science Across Disciplines In this course, we will gain exposure to the entire data science pipeline—obtaining and cleaning large and messy data sets, exploring these data and creating engaging visualizations, and communicating insights from the data in a meaningful manner. During morning sessions, we will learn the tools and techniques required to explore new and exciting data sets. During afternoon sessions, students will work in small groups with one of several faculty members on domain-specific research projects in Anthropology, Biology, Classics, Political Science, and Statistics. This course will use the R programming language. No prior experience with programming is necessary. (Not open to students who have taken STAT 0118, STAT 0201, ANTH 1230, BIOL 1230, CLAS 1230, ECON 1230, ECSC 1230, ENVS 1230, FMMC 1230, GEOG 1230, HARC 1230, HIST 1230, JAPN 1230, LNGT 1230, MATH 1230, NSCI 1230, PSCI 1230, SOCI 1230, STAT 1230, or WRPR 1230.)  ANTH/LNGT 1230: In this section we will explore indigenous political voice in unexpected places. The data we will analyze will consist of bilingual Apache-English and Maidu-English stories, songs and speeches originally recorded by anthropological linguists in the early twentieth century as examples of traditional culture. Students will use R to search this corpora for how indigenous contributors were also making claims on the future in their address to the researcher and to wider anticipated audiences.  BIOL/ECSC 1230: In this section we will work with data collected by elephant seals equipped with oceanographic instruments in the Southern Ocean. Depending on your interests, you can approach the project from different angles: students focusing on biology will explore where the seals travel and what drives their movements, while those interested in earth science will investigate the temperature and salinity profiles gathered during their dives. Working in teams, you’ll combine these perspectives to build a fuller picture of both seal ecology and the oceanographic processes that shape their environment. Along the way, you’ll practice manipulating and visualizing different types of data including maps of seal tracks, temperature and salinity profiles, and cross-sections of ocean properties. We will also bring in satellite  and autonomous float data to place seal activity and the data they collect in a broader context. By the end, you’ll have a sense of how these different data sources fit together and what unique insights we gain from using seals as oceanographers.  CLAS 1230: In this section students will gain hands-on experience with a variety of natural language processing and text mining techniques by exploring the writings of the ancient historian Plutarch, who lived during the first and second centuries AD.  We will focus on the biographies of "great men" in Plutarch’s Lives, which chronicles the history, morals, and virtues of major figures who played parallel roles in ancient Greek and Roman society. The public domain English translation from Project Gutenberg will serve as our main corpus; however, students with a background or interest in Ancient Greek can work with the text in the original language. Using the R programming language, students will transform unstructured text into quantitative data for statistical analysis and morphosyntactic parsing. We will also apply machine learning models to our data to reveal underlying patterns in large amounts of text. No prior experience with R is necessary.  PSCI 1230: Who votes in elections? Who attends protests? Why? In this section we will use the tools of data science to explore these and other questions about political participation in the Americas. We will examine engagement in different forms of participation and the demographic, economic, social, and other factors that shape participation. The class will introduce students to the basics of survey research and the study of political participation.  Students will complete a final group project showcasing the concepts and tools learned in class.   STAT 1230: In this section students will dive into the world of data science by focusing on invasive species monitoring data. Early detection is crucial to controlling many invasive species; however, there is a knowledge gap regarding the sampling effort needed to detect the invader early. In this course, we will work with decades of invasive species monitoring data collected across the United States to better understand how environmental variables play a role in the sampling effort required to detect invasive species. Students will gain experience in the entire data science pipeline, but the primary focus will be on data scraping, data visualization, and communication of data-based results to scientists and policymakers.

Data Science Across Disciplines In this course, we will gain exposure to the entire data science pipeline—obtaining and cleaning large and messy data sets, exploring these data and creating engaging visualizations, and communicating insights from the data in a meaningful manner. During morning sessions, we will learn the tools and techniques required to explore new and exciting data sets. During afternoon sessions, students will work in small groups with one of several faculty members on domain-specific research projects in Geography, Linguistics, Political Science, or Writing & Rhetoric. This course will use the R programming language. No prior experience with R is necessary.   GEOG: Students will apply data science tools to explore the geography human-environment relationships around protected areas. We will use household survey and land cover data from locations across the humid tropics where the Wildlife Conservation Society has been tracking human wellbeing and forest resource use in high-priority conservation landscapes. Projects and visualizations will be presented back to WCS to inform their ongoing monitoring and management in these sites.   LNGT: In this section, we will learn how to collect and analyze Twitter data in R. We will focus on social metrics and geographical locations to examine language variation in online communities across the United States. While the emphasis will be placed on linguistics, the statistical and analytical tools will help you work with other types of Twitter corpora in the future.   PSCI: Students will use cross-national data to explore relationships between conflict events and political, social, and economic factors in each nation. What factors contribute to conflict and violence? Our focus will be to find patterns in the data using the tools in R and discuss what those patterns suggest for addressing rising conflict and resolving ones that have already experienced violence.   WRPR: Students will learn to conduct writing studies research through working with "big data” from a multiyear survey of first-year college students about their academic confidences, attitudes, and perceptions. We will explore how educational access, identity, and language background impacts survey responses. Using statistical analysis and data visualizations, as well as writing, we will report our findings.

David Allen

Reviews and ratings for David Allen at Middlebury College.David Allen teaches Ecology and Evolution, Biostatistics, Plant Community Ecology and more.  Explore top rated instructors and find the best for you.Is David Allen good ? Find out on MiddCourses.

The experiments we performed were pretty chill and boring (counting species under a microscope, counting how many times a species travels across a line). These experiments were used for us to perform statistical analyses using R studio. It definitely benefits you to be able to write fast during class, as Allen goes through the coding quickly, but if you can get the code to run in class it sets you up well as a template for homework and project work. Exams were short answer/definition based and fairly graded.

This class was really enjoyable, Dave did a great job in keeping it relaxed and interesting. The labs were my favorite part of the class. I liked this class so much I wish I could take it for a second time.

This course was interesting and very unlike other courses I have taken at Midd. We had nightly readings and I think 4 short essays. The workload was very manageable and Dave was a super understanding professor. I recommend this class!